Alright, I decided I might as well try and get some more of this puzzle solved while I can, but... I'm stuck on the first crystal, as I do not understand the instructions. I have the colors that go with each symbol, but from there, I do not understand the whole directory/color/symbol/whatever it wants me to do.
Quote:
kar ankh set nem
saf djo nem ra
djo ra fer fer
nem fer djo nem
red blue yel blank
red blue yel red
red blank yel blank
blank blue yel blue
red: kar saf ra djo
yel: set nem fer djo
blue: ankh djo fer nem
crystal color order: blue, red, yellow
That's my notepad file I made of my info so far. What do I do with it next? Could somebody please help me?

first put all your blues together, then reds, then yellow. Go to your blue catalog and find all the blue symbols. write them down in the order they appear in the catalog. Then go to the location next to that symbol in the catalog and read the blue scroll that has that symbol. Do all the blues like this, then the reds then the yellows.